Flywheel: https://cahbir-flywheel.rutgers.edu/#/projects

TABLE OF CONTENTS:

fmap.*run-01*.* .**bold.nii.gz

High level process

• Download data to amarel
• Multi-echo multi-band Convert using Jeff custom method
  • reproIn
  • this assigns echo1 echo2 echo3 to the bids name
  • then it does the dcm2niix
• Then uploads to flywheel
• Then you send to BIDS Curation
• then you send to fMRIPrep
• Then download subject to box OR open flywheel on amarel desktop and download to amarel
• Then share

How to change file names (if necessary):

Tutorial by flywheel devs: https://docs.flywheel.io/Developer_Guides/dev_bids_curation_2_precuration/

1. Go to your Project tab